PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.TC25V
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family bHLH
Protein Properties Length: 341aa    MW: 38287.4 Da    PI: 5.7525
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.TC25VgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.63.4e-1145103255
                  HHHHHHHHHHHHHHHHHH.........HHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   2 rrahnerErrRRdriNsa.........feeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  r +h+e E+rRR++iN++         f+ Lr+l+P++    ++K +Ka+ L +++eYI+ Lq
  Aradu.TC25V  45 RSKHSETEQRRRSKINERqalflfpllFQVLRDLIPQN----DQKRDKASFLLEVIEYIQFLQ 103
                  899*************97777777776**********9....9*******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.1E-1544130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.46E-1445107No hitNo description
Gene3DG3DSA:4.10.280.102.3E-2045124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-845103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-649108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.91552102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MARSAKGHQE ELDDDDDEHF TADTSSPHKV KLDESNSGKR VNPHRSKHSE TEQRRRSKIN  60
ERQALFLFPL LFQVLRDLIP QNDQKRDKAS FLLEVIEYIQ FLQEKLQIYE QTCEGWNQEP  120
TKLIPWRGHH GPAENKADTS QAMQNGSAHE KNDVSPLLPK NVQNPIESDL STTTIQKGHT  180
IGSAVEAVPL GMQMRLDAFD PVVSSGMPNQ HLHQPISNAD MSFQIQPQVL FSKPSRGNYM  240
VSDNVLMEHE ELTNESESQS ISNAYSQGVL DTLTQALQSS GVDLSQTSVS VQIDVGRRSN  300
PGFTPSASSS KVYGNQFVTN RVNYCSEDSD QSLKRLRRDA T
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00534DAPTransfer from AT5G38860Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015962599.10.0PREDICTED: transcription factor BIM2 isoform X1
TrEMBLA0A0B2SLD81e-158A0A0B2SLD8_GLYSO; Transcription factor BIM2
STRINGGLYMA08G28010.11e-157(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17303382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G38860.16e-55BES1-interacting Myc-like protein 3